YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MIND1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI  60
   61 VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR NLDLLLGLEN RVNYTCVEVI 120
  121 NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII 180
  181 DCPAGIDAGF ITAITPANEA VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM 240
  241 IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL 300
  301 VEQDSMKAVM VEEEPKKRGF FSFFGG

Type	Start	End	Confidence
Signal Peptide	1	21	0.66
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	326	0.99