YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAX3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.86
Transmembrane Helix	39	59	0.68
Non-Cytoplasmic	60	77	0.71
Transmembrane Helix	78	100	0.88
Cytoplasmic	101	136	0.88
Transmembrane Helix	137	162	0.84
Non-Cytoplasmic	163	169	0.84
Transmembrane Helix	170	188	0.93
Cytoplasmic	189	195	0.63
Transmembrane Helix	196	216	0.82
Non-Cytoplasmic	217	229	0.83
Transmembrane Helix	230	251	0.84
Cytoplasmic	252	265	0.83
Transmembrane Helix	266	289	0.91
Non-Cytoplasmic	290	311	0.96
Transmembrane Helix	312	335	0.88
Cytoplasmic	336	351	0.94
Transmembrane Helix	352	372	0.92
Non-Cytoplasmic	373	379	0.71
Transmembrane Helix	380	399	0.93
Cytoplasmic	400	418	0.84
Transmembrane Helix	419	441	0.89
Non-Cytoplasmic	442	470	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEKIETVV AGNYLEMERE EENISGNKKS STKTKLSNFF WHGGSVYDAW FSCASNQVAQ  60
   61 VLLTLPYSFS QLGMMSGILF QLFYGLMGSW TAYLISVLYV EYRTRKEREK FDFRNHVIQW 120
  121 FEVLDGLLGK HWRNLGLIFN CTFLLFGSVI QLIACASNIY YINDKLDKRT WTYIFGACCA 180
  181 TTVFIPSFHN YRIWSFLGLA MTTYTSWYLT IASLLHGQAE DVKHSGPTTM VLYFTGATNI 240
  241 LYTFGGHAVT VEIMHAMWKP QKFKAIYLLA TIYVLTLTLP SASAVYWAFG DKLLTHSNAL 300
  301 SLLPKTGFRD TAVILMLIHQ FITFGFASTP LYFVWEKLIG VHETKSMFKR AMARLPVVVP 360
  361 IWFLAIIFPF FGPINSAVGS LLVSFTVYII PALAHMLTFA PAPSRENAVE RPPRVVGGWM 420
  421 GTYCINIFVV VWVFVVGFGF GGWASMVNFV RQIDTFGLFT KCYQCPPHKP