YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAP12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP  60
   61 RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK DVTHEMFSKE AGHRVEETKL 120
  121 RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL 180
  181 VTKLTEEKNS AVQLNNRLQQ ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Type	Start	End	Confidence
Cytoplasmic	1	214	0.57
Transmembrane Helix	215	236	0.93
Non-Cytoplasmic	237	239	0.53