YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DGAT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	132	0.75
Transmembrane Helix	133	152	0.88
Non-Cytoplasmic	153	175	0.71
Transmembrane Helix	176	195	0.95
Cytoplasmic	196	206	0.60
Transmembrane Helix	207	227	0.87
Non-Cytoplasmic	228	233	0.65
Transmembrane Helix	234	253	0.94
Cytoplasmic	254	314	0.74
Transmembrane Helix	315	333	0.66
Non-Cytoplasmic	334	362	0.57
Transmembrane Helix	363	387	0.76
Cytoplasmic	388	429	0.57
Transmembrane Helix	430	451	0.81
Non-Cytoplasmic	452	456	0.35
Transmembrane Helix	457	479	0.82
Cytoplasmic	480	489	0.38
Transmembrane Helix	490	510	0.95
Non-Cytoplasmic	511	520	0.42

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILDSAGVT TVTENGGGEF VDLDRLRRRK SRSDSSNGLL LSGSDNNSPS DDVGAPADVR  60
   61 DRIDSVVNDD AQGTANLAGD NNGGGDNNGG GRGGGEGRGN ADATFTYRPS VPAHRRARES 120
  121 PLSSDAIFKQ SHAGLFNLCV VVLIAVNSRL IIENLMKYGW LIRTDFWFSS RSLRDWPLFM 180
  181 CCISLSIFPL AAFTVEKLVL QKYISEPVVI FLHIIITMTE VLYPVYVTLR CDSAFLSGVT 240
  241 LMLLTCIVWL KLVSYAHTSY DIRSLANAAD KANPEVSYYV SLKSLAYFMV APTLCYQPSY 300
  301 PRSACIRKGW VARQFAKLVI FTGFMGFIIE QYINPIVRNS KHPLKGDLLY AIERVLKLSV 360
  361 PNLYVWLCMF YCFFHLWLNI LAELLCFGDR EFYKDWWNAK SVGDYWRMWN MPVHKWMVRH 420
  421 IYFPCLRSKI PKTLAIIIAF LVSAVFHELC IAVPCRLFKL WAFLGIMFQV PLVFITNYLQ 480
  481 ERFGSTVGNM IFWFIFCIFG QPMCVLLYYH DLMNRKGSMS