YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAG12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESVSSRGGD PVVKPSMEVW HFQIAVYFAF GFFFLRLVLD RYVFQRIALW LLSTGSAPIK  60
   61 LNDAATRAKI VKCKESLWKL LYYAACDFFV LQVIYHEPWA RDIKLYFHGW PNQELKLSIK 120
  121 LYYMCQCGFY VYGVAALLAW ETRRKDFAVM MSHHVITIIL LSYSYLTSFF RIGAIILALH 180
  181 DASDVFMETA KIFKYSEKEF GASVCFALFA VSWLLLRLIY FPFWIIRATS IELLDYLDMT 240
  241 SAEGTLMYYS FNTMLLMLLV FHIYWWYLIC AMIVRLLKNR GKVGEDIRSD SEDDDD

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.81
Transmembrane Helix	19	39	0.92
Cytoplasmic	40	118	0.75
Transmembrane Helix	119	140	0.83
Non-Cytoplasmic	141	154	0.61
Transmembrane Helix	155	179	0.78
Cytoplasmic	180	199	0.76
Transmembrane Helix	200	221	0.91
Non-Cytoplasmic	222	245	0.79
Transmembrane Helix	246	270	0.81
Cytoplasmic	271	296	0.81