YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MOT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.95
Transmembrane Helix	29	52	0.83
Non-Cytoplasmic	53	59	0.71
Transmembrane Helix	60	80	0.82
Cytoplasmic	81	103	0.80
Transmembrane Helix	104	128	0.80
Non-Cytoplasmic	129	171	0.84
Transmembrane Helix	172	192	0.91
Cytoplasmic	193	222	0.85
Transmembrane Helix	223	243	0.92
Non-Cytoplasmic	244	275	0.82
Transmembrane Helix	276	295	0.69
Cytoplasmic	296	305	0.65
Transmembrane Helix	306	326	0.85
Non-Cytoplasmic	327	342	0.55
Transmembrane Helix	343	364	0.87
Cytoplasmic	365	370	0.54
Transmembrane Helix	371	393	0.87
Non-Cytoplasmic	394	403	0.68
Transmembrane Helix	404	432	0.83
Cytoplasmic	433	464	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTTTPLLP GDRSRCGWLR RRLRLKNPLS SELSGAVGDL GTFIPIVLTL TLVSNLDLST  60
   61 TLIFTGFYNI ATGLLFDIPM PVQPMKSIAA VAVSESPHLT PSQIAAAGAS TAATLLLLGA 120
  121 TGAMSFLYNI IPLPVVRGVQ LSQGLQFAFT AIKYVRFNYD TATLKPSSSP RIWLGLDGLI 180
  181 LALAALLFII LSTGSGNDRE AEDGDLAETS SNESQSRRRR LRLLSSIPSA LIVFALGLVL 240
  241 CFIRDPSIFK DLKFGPSKFH ILRISWDDWK IGFLRAAIPQ IPLSVLNSVI AVCKLSNDLF 300
  301 DKELSATTVS ISVGVMNLIG CWFGAMPVCH GAGGLAGQYR FGARSGLSVI FLGIGKLIVG 360
  361 LVFGNSFVRI LSQFPIGILG VLLLFAGIEL AMASKDMNSK EDSFIMLVCA AVSMTGSSAA 420
  421 LGFGCGVVLY LLLKLRTLDC SSVTLFSRSS DESQVDSEAA PRDV