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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: 1A110_ARATH
Protein type: Transmembrane
Type Confidence: 0.76
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRTEPNRSR SSNSDSDKNS GNVGGGRTTG MRVIVPLQGV VQGRGGLFLG SVIPCAFFYF  60
   61 LQFYLKRNRK NDESDNSGEQ NSSASSSSSP NSGLPDPTRS QSAGHLTELT GLPRSLSRIL 120
  121 LSPRNSGGAV SVSGRVNCVL KGGDSSPYYV GQKRVEDDPY DELGNPDGVI QLGLAQNNKL 180
  181 SLDDWVLENP KEAISDGLSI SGIASYEPSD GLLELKMAVA GFMTEATKNS VTFDPSQLVL 240
  241 TSGASSAIEI LSFCLADSGN AFLVPTPCSP GYDRDVKWRT GVDIIHVPCR SADNFNMSMV 300
  301 VLDRAFYQAK KRGVRIRGII ISNPSNPMGS LLSRENLYAL LDFARERNIH IISNEIFAGS 360
  361 VHGEEGEFVS MAEIVDTEEN IDRERVHIVY DLSKDLSFRG LRSAAIYSFN ESVLSASRKL 420
  421 TTLSPVSSPT QHLLISAISN PKNVQRFVKT NRQRLQSIYT ELVEGLKELG IECTRSNGGF 480
  481 YCWADMRGLI SSYSEKGEIE LWNKLLNIGK INVIPGSCCH CIEPGWFRIC FSNLSERDVP 540
  541 VVMNRIRKVC ETCKSQN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle