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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: OCT1_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSKQEVPK LMETPPNISN DSSATEKGEA TRQQQLPNNR YALTVDEVIE QHIGALGFAQ  60
   61 ILHALLVSIA WIFDAQTTLI SIFSDAQPAA RLLATGAIVE GASLCGLASG EWEWIGPKSD 120
  121 TVVSEWNLIC QHKFLVAVPS TLFFIGSLFG SGVYGYLADS WFGRKKTLLL SCVLTFVTAF 180
  181 AISFSPNVWV YAFLRFANGF FRSGIGSCCI VLATEIVGKK WRGQVGQYGF FFFTLGFLSL 240
  241 PLMAYLERKS WRNLYRIISF LPLGYAVCLL PFAYESPRWL LVKGRNKEAM VVLKKLARLN 300
  301 GKQLPADLSL VDPIPERDDQ TSSSEKFWKT KWAVKRIIMV MMAGFGSGFV YYGIQLNAEN 360
  361 LNFNLYLTVA VNALMEFPAV FIGSFLLGVM NRRPLFSNSS YLAGFACLLC AVLSIHRVIR 420
  421 AISVAKWLQL AVEAVGFMAS STAYDVLYVY CVELFPTNVR NTAVSLLRQA FMLGASAAPL 480
  481 LVALGRESAM MSFIVFGVAS VLSGIVSLWL RETRNAPLYE TLAQQGKAEE IENETIMIT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle