YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10177962, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVSLKIGD GTARFKRSTL FSSAINLLML FSIVTTNLFA LYAFSSRSQS HTPHPLHSNN  60
   61 VSLVSQHLSL ILREIDSSHH TLTQMEKQII GYESLDLSQQ EVPQELKLFL QQHQLPLGKD 120
  121 SRTGITQMVA SVGHSCEMSL DLLSQYMSYN VFEKCPDDWS LAQKLILRAC EPLPRRRCLA 180
  181 KTVHKPGLAL FPDSLWRPVG NSSVNWSGLG CKSFECLKGK KLSRDCVGCF DLATSHEKDR 240
  241 FVKVNGKTDF LIDDVLDLGD GKIRIGFDIS SGSGTFAARM AEKNVNIISN TLNIDAPFSE 300
  301 FIAARGIFPL FMSLDQRLPF YDNVFDLIHA SNGLDLAVSN KPEKLEFLMF DLDRILKPGG 360
  361 LFWLDNFYCG NDEKKRVLTR LIERFGYKKL KWVVGEKTDA EVFLSAVLQK PARI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	414	0.99