YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.61
Transmembrane Helix	60	81	0.83
Non-Cytoplasmic	82	105	0.48
Transmembrane Helix	106	133	0.68
Cytoplasmic	134	153	0.79
Transmembrane Helix	154	174	0.89
Non-Cytoplasmic	175	187	0.48
Transmembrane Helix	188	222	0.70
Cytoplasmic	223	240	0.46
Transmembrane Helix	241	263	0.88
Non-Cytoplasmic	264	302	0.52
Transmembrane Helix	303	327	0.82
Cytoplasmic	328	383	0.57
Transmembrane Helix	384	404	0.89
Non-Cytoplasmic	405	412	0.64
Transmembrane Helix	413	434	0.93
Cytoplasmic	435	442	0.82
Transmembrane Helix	443	462	0.96
Non-Cytoplasmic	463	481	0.88
Transmembrane Helix	482	501	0.91
Cytoplasmic	502	551	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVETGHHHQH PPAPAAAGHP PVPSMAMARN MGTTWPPAEQ LHHLQYCIHS NPSWHETVVL  60
   61 AFQHYIVMLG TTVLIANTLV SPMGGDPGDK ARVIQTILFM SGINTLLQTL IGTRLPTVMG 120
  121 VSFAYVLPVL SIIRDYNNGQ FDSEKQRFRH TMRTVQGSLI ISSFVNIIIG YGQAWGNLIR 180
  181 IFSPIIVVPV VSVVSLGLFL RGFPLLANCV EIGLPMLILL IITQQYLKHA FSRISMILER 240
  241 YALLVCLAII WAFAAILTVS GAYNNVSTAT KQSCRTDRAF LMSSAPWIRI PYPFQWGTPI 300
  301 FKASHVFGMF GAAIVASAES TGVFFAASRL AGATAPPAHV VSRSIGLQGI GVLLEGIFGS 360
  361 ITGNTASVEN VGLLGLTRIG SRRVVQVSTF FMIFFSIFGK FGAFFASIPL PIFAGVYCIL 420
  421 LGIVVAVGIS FIQFTDTNSM RNMYVIGVSL FLSLSIAQYF LANTSRAGYG PVRTAGGWFN 480
  481 DILNTIFASA PLVATILATI LDNTLEARHA SDDARGIPWW KPFQHRNGDG RNDEFYSMPL 540
  541 RINELMPTRF L