YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTP11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN  60
   61 VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK SETLAIRISN IANMLLFAAK 120
  121 VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA 180
  181 SVMATLGLQI ILESLRTMLS SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI 240
  241 VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV 300
  301 GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE 360
  361 SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC

Type	Start	End	Confidence
Cytoplasmic	1	113	0.93
Transmembrane Helix	114	137	0.73
Non-Cytoplasmic	138	139	0.49
Transmembrane Helix	140	158	0.77
Cytoplasmic	159	172	0.70
Transmembrane Helix	173	192	0.95
Non-Cytoplasmic	193	212	0.81
Transmembrane Helix	213	233	0.89
Cytoplasmic	234	247	0.71
Transmembrane Helix	248	268	0.82
Non-Cytoplasmic	269	274	0.56
Transmembrane Helix	275	293	0.65
Cytoplasmic	294	394	0.83