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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PERK1_ARATH
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTAPSPGTT PSPSPPSPPT NSTTTTPPPA ASSPPPTTTP SSPPPSPSTN STSPPPSSPL  60
   61 PPSLPPPSPP GSLTPPLPQP SPSAPITPSP PSPTTPSNPR SPPSPNQGPP NTPSGSTPRT 120
  121 PSNTKPSPPS DSSDGLSTGV VVGIAIGGVA ILVILTLICL LCKKKRRRRH DDEAAYYVPP 180
  181 PPPSGPKAGG PYGGQQQYWQ QQNASRPSDN HVVTSLPPPK PPSPPRKPPP PPPPPAFMSS 240
  241 SGGSDYSDLP VLPPPSPGLV LGFSKSTFTY EELSRATNGF SEANLLGQGG FGYVHKGILP 300
  301 SGKEVAVKQL KAGSGQGERE FQAEVEIISR VHHRHLVSLI GYCMAGVQRL LVYEFVPNNN 360
  361 LEFHLHGKGR PTMEWSTRLK IALGSAKGLS YLHEDCNPKI IHRDIKASNI LIDFKFEAKV 420
  421 ADFGLAKIAS DTNTHVSTRV MGTFGYLAPE YAASGKLTEK SDVFSFGVVL LELITGRRPV 480
  481 DANNVYVDDS LVDWARPLLN RASEEGDFEG LADSKMGNEY DREEMARMVA CAAACVRHSA 540
  541 RRRPRMSQIV RALEGNVSLS DLNEGMRPGH SNVYSSYGGS TDYDTSQYND DMIKFRKMAL 600
  601 GTQEYGTTGE YSNPTSDYGL YPSGSSSEGQ ATREMEMGKI KKTGQGYSGP SL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle