YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MVD1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEKWVVMV TAQTPTNIAV IKYWGKRDEV RILPINDSIS VTLDPDHLCT LTTVAVSPSF  60
   61 DRDRMWLNGK EISLSGSRYQ NCLREIRSRA DDVEDKEKGI KIAKKDWEKL HLHIASHNNF 120
  121 PTAAGLASSA AGFACLVFAL AKLMNVNEDP SQLSAIARQG SGSACRSLFG GFVKWNMGNK 180
  181 EDGSDSVAVQ LVDDKHWDDL VIIIAVVSSR QKETSSTSGM RESVETSLLL QHRAKEVVPV 240
  241 RILQMEEAIK NRDFTSFTKL TCSDSNQFHA VCMDTSPPIF YMNDTSHRII SLVEKWNRSA 300
  301 GTPEIAYTFD AGPNAVMIAR NRKVAVELLQ GLLYCFPPKP DTDMKSYVLG DTSIVKEAGL 360
  361 EGELPQGIKD KIGSQDQKGE VSYFICSRPG RGPVVLQDQT QALLHPQTGL PK

Type	Start	End	Confidence
Cytoplasmic	1	119	0.53
Transmembrane Helix	120	141	0.52
Non-Cytoplasmic	142	412	0.94