YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COPT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHDHMHDMP PPSPSSSSMS NHTTPHMMMM HMTFFWGKNT EVLFSGWPGT SSGMYALCLI  60
   61 VIFLLAVIAE WLAHSPILRV SGSTNRAAGL AQTAVYTLKT GLSYLVMLAV MSFNAGVFIV 120
  121 AIAGYGVGFF LFGSTTFKKP SDDQKTAELL PPSSGCVC

Type	Start	End	Confidence
Cytoplasmic	1	20	0.60
Transmembrane Helix	21	37	0.52
Non-Cytoplasmic	38	51	0.47
Transmembrane Helix	52	74	0.87
Cytoplasmic	75	94	0.45
Transmembrane Helix	95	109	0.44
Non-Cytoplasmic	110	110	0.31
Transmembrane Helix	111	133	0.82
Cytoplasmic	134	158	0.65