YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LPCT2_ARATH
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPDLSSPL IHHQSSDQPE VVISIADDDD DESGLNLLPA VVDPRVSRGF EFDHLNPYGF  60
   61 LSESEPPVLG PTTVDPFRNN TPGVSGLYEA IKLVICLPIA LIRLVLFAAS LAVGYLATKL 120
  121 ALAGWKDKEN PMPLWRCRIM WITRICTRCI LFSFGYQWIR RKGKPARREI APIVVSNHVS 180
  181 YIEPIFYFYE LSPTIVASES HDSLPFVGTI IRAMQVIYVN RFSQTSRKNA VHEIKRKASC 240
  241 DRFPRLLLFP EGTTTNGKVL ISFQLGAFIP GYPIQPVVVR YPHVHFDQSW GNISLLTLMF 300
  301 RMFTQFHNFM EVEYLPVIYP SEKQKQNAVR LSQKTSHAIA TSLNVVQTSH SFADLMLLNK 360
  361 ATELKLENPS NYMVEMARVE SLFHVSSLEA TRFLDTFVSM IPDSSGRVRL HDFLRGLKLK 420
  421 PCPLSKRIFE FIDVEKVGSI TFKQFLFASG HVLTQPLFKQ TCELAFSHCD ADGDGYITIQ 480
  481 ELGEALKNTI PNLNKDEIRG MYHLLDDDQD QRISQNDLLS CLRRNPLLIA IFAPDLAPT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle