YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EAAC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEDRAILTF HRIPSLNSSL ITTSSPAKSG AEQFRRRVLR NPARGDFGLG RFACISLVEK  60
   61 CEQREFAPTT AQLLNNPLAI LALVPKDAAI FAAGALAGAA AKTVTAPLDR IKLLMQTHGI 120
  121 RLGQQSAKKA IGFIEAITLI AKEEGVKGYW KGNLPQVIRV LPYSAVQLLA YESYKNLFKG 180
  181 KDDQLSVIGR LAAGACAGMT STLLTYPLDV LRLRLAVEPR YRTMSQVALS MLRDEGIASF 240
  241 YYGLGPSLVG IAPYIAVNFC IFDLVKKSLP EEYRKKAQSS LLTAVLSAGI ATLTCYPLDT 300
  301 VRRQMQMRGT PYKSIPEAFA GIIDRDGLIG LYRGFLPNAL KTLPNSSIRL TTFDMVKRLI 360
  361 ATSEKQLQKI SDDNRNRDQA Q

Type	Start	End	Confidence
Cytoplasmic	1	186	0.69
Transmembrane Helix	187	206	0.67
Non-Cytoplasmic	207	239	0.81
Transmembrane Helix	240	262	0.79
Cytoplasmic	263	278	0.69
Transmembrane Helix	279	298	0.78
Non-Cytoplasmic	299	381	0.75