YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25407290, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNSYYSSA SSSGFRVCPP GVPSKCWCGE EIITFTSKTK ENPYRRFYRC AIAMKRENEE  60
   61 HLFKWVDEAL LDEIKMVNEK CKRVVENISD LRMNVMANME LLNKNAKQME EELIKKMEGE 120
  121 LLTMKENVEE LGHVMAKSAL KTVGVAVVIV ASIVWLWGRV RFKETTEIVP YEFYGIRAQK 180
  181 SKGKATLKAH FKNLRAQTQN AERSLLRTTK RPNSQRLSVV ATPNRLCVAG EILSTGLLRF 240
  241 WKMDIISQLQ EQVNTIAAIT FNAFGTLQRD APPVQLSPNY PEPPATTTVT DDATPFPEQP 300
  301 KQLSAGLVKA AKQFDALVAA LPLSEGGEGA QLKRIAELQV ENDLVGQELQ KQLEAAEKEL 360
  361 KQVQELFGQA ADNCLNMKKP E

Type	Start	End	Confidence
Cytoplasmic	1	138	0.66
Transmembrane Helix	139	158	0.66
Non-Cytoplasmic	159	381	0.96