YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POED1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVEIVWLVK AAWITVWIVS ILPLVIASIP SSKLNSFREL VLSFAGRGKI LHPSSQKFTV  60
   61 PQKFFGHFYV VGVVWTTLLL AATWMYACKM AGGSHVFSFH MTHVEHRFKV GRAVFLLLLM 120
  121 EIHVLRRVIE SFYVFKYSTS ARMHILAYVG ALFYYVAAPL SLCSNIAPEV ARFVGSQVAE 180
  181 FIASGKSHSH DFNLLLSISP LMKLGSLQWI GGAIFLWGWI HQRRCHAILG SLREYPSQAK 240
  241 EYIIPYGDWF EMVSCPHFLA EIVLYLGLLI SSGGTDISIW LLFGFVAANL TYAAGETHRW 300
  301 YLQKFENYPA SRHAIFPHVY

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.40
Transmembrane Helix	7	31	0.80
Cytoplasmic	32	64	0.41
Transmembrane Helix	65	88	0.90
Non-Cytoplasmic	89	107	0.42
Transmembrane Helix	108	125	0.74
Cytoplasmic	126	143	0.55
Transmembrane Helix	144	167	0.78
Non-Cytoplasmic	168	199	0.64
Transmembrane Helix	200	221	0.82
Cytoplasmic	222	252	0.63
Transmembrane Helix	253	275	0.56
Non-Cytoplasmic	276	276	0.32
Transmembrane Helix	277	295	0.73
Cytoplasmic	296	320	0.63