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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PSKR2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIILLLVFF VGSSVSQPCH PNDLSALREL AGALKNKSVT ESWLNGSRCC EWDGVFCEGS  60
   61 DVSGRVTKLV LPEKGLEGVI SKSLGELTEL RVLDLSRNQL KGEVPAEISK LEQLQVLDLS 120
  121 HNLLSGSVLG VVSGLKLIQS LNISSNSLSG KLSDVGVFPG LVMLNVSNNL FEGEIHPELC 180
  181 SSSGGIQVLD LSMNRLVGNL DGLYNCSKSI QQLHIDSNRL TGQLPDYLYS IRELEQLSLS 240
  241 GNYLSGELSK NLSNLSGLKS LLISENRFSD VIPDVFGNLT QLEHLDVSSN KFSGRFPPSL 300
  301 SQCSKLRVLD LRNNSLSGSI NLNFTGFTDL CVLDLASNHF SGPLPDSLGH CPKMKILSLA 360
  361 KNEFRGKIPD TFKNLQSLLF LSLSNNSFVD FSETMNVLQH CRNLSTLILS KNFIGEEIPN 420
  421 NVTGFDNLAI LALGNCGLRG QIPSWLLNCK KLEVLDLSWN HFYGTIPHWI GKMESLFYID 480
  481 FSNNTLTGAI PVAITELKNL IRLNGTASQM TDSSGIPLYV KRNKSSNGLP YNQVSRFPPS 540
  541 IYLNNNRLNG TILPEIGRLK ELHMLDLSRN NFTGTIPDSI SGLDNLEVLD LSYNHLYGSI 600
  601 PLSFQSLTFL SRFSVAYNRL TGAIPSGGQF YSFPHSSFEG NLGLCRAIDS PCDVLMSNML 660
  661 NPKGSSRRNN NGGKFGRSSI VVLTISLAIG ITLLLSVILL RISRKDVDDR INDVDEETIS 720
  721 GVSKALGPSK IVLFHSCGCK DLSVEELLKS TNNFSQANII GCGGFGLVYK ANFPDGSKAA 780
  781 VKRLSGDCGQ MEREFQAEVE ALSRAEHKNL VSLQGYCKHG NDRLLIYSFM ENGSLDYWLH 840
  841 ERVDGNMTLI WDVRLKIAQG AARGLAYLHK VCEPNVIHRD VKSSNILLDE KFEAHLADFG 900
  901 LARLLRPYDT HVTTDLVGTL GYIPPEYSQS LIATCRGDVY SFGVVLLELV TGRRPVEVCK 960
  961 GKSCRDLVSR VFQMKAEKRE AELIDTTIRE NVNERTVLEM LEIACKCIDH EPRRRPLIEE1020
 1021 VVTWLEDLPM ESVQQQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle