YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7485359, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNNPVLPVS DPPLAGENDS DGKGVDDRLF KGSAMTKRGA YAALSYMACA GNFLDFTCII  60
   61 DSNHVFWSRV QFWKIISFTA ADSFSIDSAS TFVPVKTLFH TLPLAIAYLL YMVVLLCSCV 120
  121 LAFVLNYCIF LNTTLNSALT QTICGNMKDL FTVGLGWMLF GGLPFDLMNV IGQLFGFFGP 180
  181 GKSNFLNNQS MDVPPRRSLA ASLSPLRLID GLPRRRSFNY NQMPEEPIKL TVLKLDGSSF 240
  241 GIQVLKTATV GELKMAVEAA FSHLPISGPG KISWFSTTPE TRKKNVIREV EEDGVVDSIP 300
  301 RSQPSFLATV LGGLLSYKST PSQRGTKYRN VTASRVFNKL IARFRFKCNS EKDVWNRKKL 360
  361 ISET

Type	Start	End	Confidence
Cytoplasmic	1	39	0.90
Transmembrane Helix	40	60	0.71
Non-Cytoplasmic	61	106	0.60
Transmembrane Helix	107	130	0.92
Cytoplasmic	131	149	0.63
Transmembrane Helix	150	176	0.73
Non-Cytoplasmic	177	364	0.65