YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPT5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.68
Transmembrane Helix	54	75	0.87
Non-Cytoplasmic	76	129	0.59
Transmembrane Helix	130	152	0.87
Cytoplasmic	153	162	0.56
Transmembrane Helix	163	183	0.78
Non-Cytoplasmic	184	190	0.63
Transmembrane Helix	191	209	0.59
Cytoplasmic	210	221	0.87
Transmembrane Helix	222	243	0.85
Non-Cytoplasmic	244	265	0.66
Transmembrane Helix	266	284	0.78
Cytoplasmic	285	291	0.48
Transmembrane Helix	292	319	0.79
Non-Cytoplasmic	320	370	0.73
Transmembrane Helix	371	394	0.88
Cytoplasmic	395	428	0.76
Transmembrane Helix	429	449	0.92
Non-Cytoplasmic	450	459	0.61
Transmembrane Helix	460	482	0.92
Cytoplasmic	483	543	0.55
Transmembrane Helix	544	566	0.92
Non-Cytoplasmic	567	589	0.71
Transmembrane Helix	590	608	0.72
Cytoplasmic	609	615	0.56
Transmembrane Helix	616	635	0.93
Non-Cytoplasmic	636	663	0.67
Transmembrane Helix	664	682	0.91
Cytoplasmic	683	693	0.84
Transmembrane Helix	694	715	0.94
Non-Cytoplasmic	716	753	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSLEVSKP PEHKVESKIV IADEEEEDEN DSPIEEVRLT VPITDDPSLP VLTFRTWFLG  60
   61 MVSCVVLAFV NNFFGYRSNP LTVSSVVAQI ITLPLGKLMA TTLPTTKLRL PGTNWSCSLN 120
  121 PGPFNMKEHV LITIFANTGA GGAYATSILT IVKAFYHRNL NPAAAMLLVQ TTQLLGYGWA 180
  181 GMFRKYLVDS PYMWWPANLV QVSLFRALHE KEEKREGKQT KLRFFLIVFF LSFTYYIVPG 240
  241 YLFPSISYLS FVCWIWTRSV TAQQIGSGLH GLGIGSFGLD WSTVAGFLGS PLAVPFFAIA 300
  301 NSFGGFIIFF YIILPIFYWS NAYEAKKFPF YTSHPFDHTG QRYNTTRILN QKTFNIDLPA 360
  361 YESYSKLYLS ILFALIYGLS FGTLTATISH VALFDGKFIW ELWKKATLTT KDKFGDVHTR 420
  421 LMKKNYKEVP QWWFVAVLAA SFVLALYACE GFGKQLQLPW WGLLLACAIA FTFTLPIGVI 480
  481 LATTNQRMGL NVISELIIGF LYPGKPLANV AFKTYGSVSI AQALYFVGDF KLGHYMKIPP 540
  541 RSMFIVQLVA TIVASTVSFG TTWWLLSSVE NICNTDMLPK SSPWTCPGDV VFYNASIIWG 600
  601 IIGPGRMFTS KGIYPGMNWF FLIGFLAPVP VWFFARKFPE KKWIHQIHIP LIFSGANVMP 660
  661 MAKAVHYWSW FAVGIVFNYY IFRRYKGWWA RHNYILSAAL DAGTAVMGVL IYFALQNNNI 720
  721 SLPDWWGNEN TDHCPLANCP TEKGIVAKGC PVF