YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12323255, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSIYTEINT KAKKARTNVD YFYTAYMKAT NTDLGDEAFK AVTNPILSQM EEIINTAKHV  60
   61 AYRVGVIRST NSDPNFLRDL DEVDKMGDDV FEKSKTALDI MRKAVVDAKE RKKARDEAIK 120
  121 EEEEARKEEV KKKAKNEAGE SSSHNVPTEK KKRRRRNGGG AENEAAKPIL DLGFIFHCFP 180
  181 IDLDLLPGKS QSLFPSGVAE GYWLKQASMS PYAGLKGNQV TSCADILSAM LLRAIGQKLQ 240
  241 MAYGLNARLL GFLKSSRDKV ILPCGDIAAL VYLWNPFTIV SCVGLSTSPI ENLAVILALF 300
  301 GAVTRRVPLA AFGLVIATHL SLYPATLTIP IIFLLGYGLD APPIKLFLQT RSVENEESST 360
  361 STVSKQAKLK QTTHLPFLWK TVAHFLFWVL LWSLYVLILC ALSLNKYGGL EEMFKRTYGF 420
  421 ILSIEDLSPN IGVFWYFFAE VFDFFRNFFL IVLHVGDSAL YLSLWALFVN ELLDMKFSFF 480
  481 LFCGYLGISL LSPVMHNLWI WRGTGNANFY FGNAIGYACF QIVFVVESVS AMLNHDRALK 540
  541 RSNSNHREVK S

Type	Start	End	Confidence
Cytoplasmic	1	259	0.59
Transmembrane Helix	260	274	0.35
Non-Cytoplasmic	275	276	0.47
Transmembrane Helix	277	303	0.64
Cytoplasmic	304	311	0.65
Transmembrane Helix	312	337	0.80
Non-Cytoplasmic	338	383	0.94
Transmembrane Helix	384	405	0.92
Cytoplasmic	406	417	0.83
Transmembrane Helix	418	439	0.92
Non-Cytoplasmic	440	447	0.85
Transmembrane Helix	448	469	0.92
Cytoplasmic	470	476	0.92
Transmembrane Helix	477	500	0.88
Non-Cytoplasmic	501	513	0.81
Transmembrane Helix	514	533	0.93
Cytoplasmic	534	551	0.93