YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MARHB_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEGSKRGS RADSLEAEPP LPPPPPPPPP GESSLVPTSP RYRPPLPAPL ERIVGSGEPP  60
   61 VELAPRRKGE PLPPLPPSRL PGDQEVSAAG DSCEGPRRLP EVKLPEAAAG KGSPAEPEAG 120
  121 ACREGERRGT GDQPETRSVY SSRSSSSGGS GDQRSGHQHQ HHQPICKICF QGAEQGELLN 180
  181 PCRCDGSVRY THQLCLLKWI SERGSWTCEL CCYRYHVTAI KMKQPCQWQS ISITLVEKVQ 240
  241 MIAVILGSLF LIASVTWLLW SAFSPYAVWQ RKDILFQICY GMYGFMDLVC IGLIVHEGAA 300
  301 VYRVFKRWRA VNLHWDVLNY DKATDIEESS RGESSTSRTL WLPLSALRNR NLVHPTQLTS 360
  361 PRFQCGYVLL HLFNRMRAHE DVSEDNGSGE VVMRVTSV

Type	Start	End	Confidence
Cytoplasmic	1	240	0.90
Transmembrane Helix	241	261	0.93
Non-Cytoplasmic	262	279	0.77
Transmembrane Helix	280	302	0.83
Cytoplasmic	303	398	0.89