YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12323762, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSMKSFVHI LRRYISIAIT LFYNLIWCLF DNFDYPILIK LADTFLSLYF LIFCDLRPIT  60
   61 VDLNDGETTL HFWISGHRKI NRPNLVMLHG YGGNSKWQFI HQVSDLSKSF NLFIPDLVFF 120
  121 GKSYSRNTDR TIEFQARSIV GGLKRLGCGD GDLSVYSISY GGFVAYRIAK IWPEMIEKLV 180
  181 IVSSGVGFTQ QQKMTEMKKH GGDVSEILVP SNPRDLRLLV KVSMNTGIRF LDWVPDFILS 240
  241 QFIATNRQEL VDLAKNLLER EEEPELFSIS QRTLIVWGDK DNVFPLEHGR RLQRHLPNSS 300
  301 LEVLKEIGHG VNIEAPTTLN NLIISFVLGV P

Type	Start	End	Confidence
Cytoplasmic	1	9	0.85
Transmembrane Helix	10	30	0.80
Non-Cytoplasmic	31	331	0.72