YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7487743, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLTSLSKNA NSTATAVTVS SIQKLPFLSL SETLPCPKSS RKPTFLPSLV LLSCGLVFSL  60
   61 ITFVKGGPSS VLAAVAKSGF TAAFSLIFVS EIGDKTFFIA ALLAMQYEKT LVLLGSMGAL 120
  121 SLMTILSVVI GKIFQSVPAQ FQTTLPIGEY AAIALLMFFG LKSIKDAWDL PPVEAKNGEE 180
  181 TGIELGEYSE AEELVKEKAS KKLTNPLEIL WKSFSLVFFA EWGDRSMLAT VALGAAQSPL 240
  241 GVASGAIAGH LVATVLAIMG GAFLANYISE KLV

Type	Start	End	Confidence
Cytoplasmic	1	43	0.97
Transmembrane Helix	44	64	0.93
Non-Cytoplasmic	65	72	0.72
Transmembrane Helix	73	92	0.84
Cytoplasmic	93	109	0.81
Transmembrane Helix	110	133	0.90
Non-Cytoplasmic	134	140	0.81
Transmembrane Helix	141	161	0.86
Cytoplasmic	162	215	0.88
Transmembrane Helix	216	236	0.57
Non-Cytoplasmic	237	245	0.57
Transmembrane Helix	246	268	0.88
Cytoplasmic	269	273	0.77