YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP17_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.99
Transmembrane Helix	41	63	0.92
Non-Cytoplasmic	64	90	0.90
Transmembrane Helix	91	108	0.97
Cytoplasmic	109	121	0.92
Transmembrane Helix	122	145	0.84
Non-Cytoplasmic	146	153	0.77
Transmembrane Helix	154	175	0.91
Cytoplasmic	176	182	0.74
Transmembrane Helix	183	199	0.97
Non-Cytoplasmic	200	217	0.84
Transmembrane Helix	218	239	0.94
Cytoplasmic	240	257	0.95
Transmembrane Helix	258	279	0.94
Non-Cytoplasmic	280	299	0.92
Transmembrane Helix	300	322	0.85
Cytoplasmic	323	331	0.61
Transmembrane Helix	332	349	0.95
Non-Cytoplasmic	350	357	0.73
Transmembrane Helix	358	378	0.93
Cytoplasmic	379	398	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMSKASKQT TRHEESEHVQ NPEPDQILSP RRSLELKQRK WWISVSLCLF LVLLGDSLVM  60
   61 LLLNFFYVQM KQDRREEYDQ DLQYKGTWTQ ALIQNAAFPI LIPLFFIFPK PKQHLETNNT 120
  121 SFLSLRLFFL YLSLGVLVAA HSKLFALGKL VSNYGIFSLI STTQLIFTAV LTAIINRFKF 180
  181 TRWIIISILL TIVIYVLGTP DFGGQPHDGE EFGYNIQAWL AFSATIAFSL SLCLIQLGFE 240
  241 KLQVKTKRYG NEKVFRMVLE MQICVAFVAS VVCLVGLFAS DEYKELKGDS KRFKKGETYY 300
  301 VLSLVGLALS WQVWAVGMIG LVHYVSGLFG DVVHMCASPF VALFVVLAFD FMDDVFSWPR 360
  361 IGALIGTVLA LGSYFYTLHK RNKKKMAELN QSENNVEV