YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ASAT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.70
Transmembrane Helix	7	25	0.90
Cytoplasmic	26	31	0.83
Transmembrane Helix	32	52	0.89
Non-Cytoplasmic	53	56	0.53
Transmembrane Helix	57	76	0.78
Cytoplasmic	77	86	0.63
Transmembrane Helix	87	105	0.60
Non-Cytoplasmic	106	120	0.57
Transmembrane Helix	121	138	0.60
Cytoplasmic	139	148	0.78
Transmembrane Helix	149	172	0.84
Non-Cytoplasmic	173	230	0.82
Transmembrane Helix	231	252	0.92
Cytoplasmic	253	260	0.80
Transmembrane Helix	261	279	0.73
Non-Cytoplasmic	280	290	0.53
Transmembrane Helix	291	310	0.94
Cytoplasmic	311	345	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFIKAWGL VIISLCYTFF IAKLVPKGIK RLILFFPVFL IFFIVPFLIY SLHLLGITAF  60
   61 FIAWLANFKL LLFALGRGPL SSNHKPLSLP IFLAVSCLPI KIQLSPKPTK THSHEGSTEG 120
  121 PLIYTIKAVF VVLIIKAYEY STKLPEKVVL TLYAIHIYFA LEIILAATAA AVRAMSDLEL 180
  181 EPQFNKPYLA TSLQDFWGRR WNLMVTGILR PTVYEPSLQL FSVLGPNYSQ ILAAFGTFVV 240
  241 SGIMHELIFF YMGRLRPDWK MMWFFLINGF CTTVEIAIKK TINGRWRFPK AISQVLTLTF 300
  301 VMVTALWLFL PEFNRCNIVE KALDEYAAIG AFAVEVRRKL TAYLF