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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25408755, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVQDRAAPS PAKPPKSQIR ELPTHQQIRR RFSEPKNLDF STWFSENLSR IAVFSLLIVT  60
   61 IVAFFFLYNT TDTASLLCFQ SQSTQFLQSL SRPQIKWNSI PVVPDKTSPY ANFQTEKWIV 120
  121 VSVTKYPTEE LKSLVKIRGW QVLAIGNSAT PKDWSLKGSI FLSLDAQAEL GYRVLDHLPY 180
  181 DSFVRKSVGY LFAIQHGAKK IYDADDRGEV IDGDLGKHFD VELVGLDSKQ EPILQYSHEN 240
  241 PNRTVVNPYI HFGQRSVWPR GLPLENVGEI NHEEYYTEVF GGKQFIQQGI SNGLPDVDSV 300
  301 FYFTRKTTLE AFDIRFDEHS PKVALPQGVM VPVNSFNTLY HSSAFWGLML PVSVSSMASD 360
  361 VLRGYWGQRL LWELGGYVAV YPPTAHRFDR IEAYPFVEEK DLHVNVGRLI KFLLAWRSEK 420
  421 HSFFETVLDL SFAMAEEGFW TEQDLKFTAA WLQDLIAVGY QQPRLMSLEL DRPRASIGHG 480
  481 DRKEFVPRKL PSVHLGVEET GTVSTEIGNL IRWRKNFGNV VLVMFCNGPV ERTALEWRLL 540
  541 YGRIFKTVVI LSSQKNSDLY VEEAKLDHIY KHLPKIFDRY SSAEGFLFVE DDTVLNYWNL 600
  601 LQADKSKIWT TDKVSKSWTS VKPTGNSDWF SVQAELVKKT VSTMPAHFQV NYKDATKNNH 660
  661 ETLTVCSSEV FYVPKRLVTD FIDLVDLVGD MDLHYKVAVP MFFLSMDSPQ NFDPVLGSMV 720
  721 YKRKSASFNT SSSLYSAKAP AVHPWSISSE QDFIKLVQQM AEGDPLLMEL V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle