YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4006887, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLGYCLKE KKTCVRWVEI YFDDCLCNLN DDVSFALGIA SLLCWGVAEI PQVITNFRTK  60
   61 SSNGVSLSFL LAWVAGDIFN LVGCLLEPAT LPTQFYTALL YTVSTVVLVI QTIYYDYIYK 120
  121 LCRHRRTKIC QKDEEDEEKR PLKPPKTMGS AISIPGGSYK DSSRREFYYT SARSLAGSGT 180
  181 PPLRTSYFRV AKSGLRLWQS TMMVRHRTKM RQCRRAGFGT FLAASASLPL QAKSLAEKYA 240
  241 HASSRRLLNE RIVEHSALGQ WLGWLMAAIY MGGRIPQIWL NIKRGSVEGL NPLMFIFALV 300
  301 ANATYVGSIL VRTTEWDNIK PNLPWLLDAI VCVVLDLFII LQYIYYKYCR IKSLESREED 360
  361 AYGDYVEASK TFVS

Type	Start	End	Confidence
Cytoplasmic	1	66	0.70
Transmembrane Helix	67	86	0.91
Non-Cytoplasmic	87	96	0.72
Transmembrane Helix	97	118	0.93
Cytoplasmic	119	212	0.99
Transmembrane Helix	213	232	0.87
Non-Cytoplasmic	233	256	0.86
Transmembrane Helix	257	278	0.82
Cytoplasmic	279	289	0.80
Transmembrane Helix	290	311	0.88
Non-Cytoplasmic	312	324	0.84
Transmembrane Helix	325	346	0.93
Cytoplasmic	347	374	0.95