YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25407589, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTVIGFLN ILTLISSIVL LGSALWMGRS KTTCEHFLQK PLLILGLAIL ILSVAGLVGA  60
   61 CCDVAWVLWV YLFFMVFIIV ALMGLTLFGF IVTSHSGGVV VDGRVYKEFK LEAYHPWLKT 120
  121 RVVDTNYWVT IKTCLLGSVT CSKLALWTPL DYLQKDLSPL QLFTVLAVAR LKTPNALNIT 180
  181 ASLMDVTACP NPDLDGNSPG LFSFLMQQLF LLFSRHVGQG GGMGEIGISE KYLC

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.86
Transmembrane Helix	6	28	0.91
Cytoplasmic	29	41	0.79
Transmembrane Helix	42	62	0.92
Non-Cytoplasmic	63	68	0.55
Transmembrane Helix	69	92	0.87
Cytoplasmic	93	234	0.84