YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6580153, gi\|1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMKFYTFTF LICLFSKLQG HCKSDISLGN SLTLTSPLEY TPGFMGKAYI IETESSSTRE  60
   61 PGFKAALTME SSDKDDGRYL CSLQIFLGDV RVWSSGHYSK MYVSSKCIIE LTKDGDLRLK 120
  121 SSYKHVGWRS GTSGQGVERL EIQSTGNLVL VDAKNLIKWQ SFNFPTDVML SGQRLDVATQ 180
  181 LTSFPNDSTL FYSFEVLRDK IALFLNLNKL KYSYWEYKPR EKNTTVNFVR LGLKGLDLFD 240
  241 DNSRIIGRIE QPLIRFLALG NRTGNLGLYS YKPEKGKFEA TFQAVSDTCD LPVACKPYGI 300
  301 CTFSKSCSCI KVVSNGYCSS INGEEAVSVK RLCDHEMVEL NGVTTVLRNG TQVRNISKER 360
  361 CEELCKKDCE CGAASYSVSE ESCVMYGIVM GVKQIERVSG LSYMVKIPKG VRLSDEKSNV 420
  421 RKWVVGLVGG IDGFVILLLI SGFAFYFIRK RRKSLLLPPP PPPPPPLSQQ PANTDS

Type	Start	End	Confidence
Signal Peptide	1	20	0.96
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	422	0.99
Transmembrane Helix	423	447	0.91
Cytoplasmic	448	476	0.97