YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PMD1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVEDRAAK GISDYDQGGV KTTELERKIE DMENKNQELT RENRELKERL ERLTGEIEEM  60
   61 KDVEAEMNQR FGEMEKEIEE YEEEKKALEA ISTRAVELET EVSNLHDDLI TSLNGVDKTA 120
  121 EEVAELKKAL AEIVEKLEGC EKEAEGLRKD RAEVEKRVRD LERKIGVLEV REMEEKSKKL 180
  181 RSEEEMREID DEKKREIEEL QKTVIVLNLE LVKNVEELKK WKSKKKLTEE ALSETQKREK 240
  241 ELELKKDELL KKVEEGNKTV FALNERTMKP SNGVRDTNGG DQKGSLEAEY QWPVVAAGSV 300
  301 GAAGLVAATF FVCYSKLR

Type	Start	End	Confidence
Non-Cytoplasmic	1	291	0.95
Transmembrane Helix	292	314	0.87
Cytoplasmic	315	318	0.78