YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7270785, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCGCVFASQ TVSSLLPFEI KTYASKLRAS SAQLPRTQIQ INPSDDLSIY GSDKSPANRV  60
   61 SLPSHVNSIT STTNPFVKHC LKLRQSSSYR HAHGSVLVVG TIPIRYVSVI LYSLFFFIAT 120
  121 ERIVESSFLF YCVRLISCEI EFQGDNFKGV VHREVCMFQT NKQGMTTEIE CLLLHEEAKI 180
  181 PQGLESLSIR IVRVSSLVMK KLSGVQSTES VEAIALMRIP SSFTDLKDDK DIITDCNKWF 240
  241 PSAHRVLVLD SIQDPGNLGT LVRSAMAFNW DGAFLLPGCC DPYNDKALRA SRGASFQLPI 300
  301 VSGNWNHLKL LENEFQMKLL AGHPATTTQK LKPVSKLSVE FAQSLAEKPL CLILGSEGNG 360
  361 LSEQARKVCV LVSIPMAGDF ESLNVSVAGG IFLYMLQNLV

Type	Start	End	Confidence
Cytoplasmic	1	93	0.69
Transmembrane Helix	94	119	0.60
Non-Cytoplasmic	120	400	0.97