YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25404595, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPIPKPLFF FFFLNYVSLS TSLSLHLPLT SLPISTTTNS HRFTTSLLSR KNPSPSSPPY  60
   61 NFRSRFKYSM ALIISLPIGT PPQAQQMVLD TGSQLSWIQC HRKKLPPKPK TSFDPSLSSS 120
  121 FSTLPCSHPL CKPRIPDFTL PTSCDSNRLC HYSYFYADGT FAEGNLVKEK ITFSNTEITP 180
  181 PLILGCATES SDDRGILGMN RGRLSFVSQA KISKFSYCIP PKSNRPGFTP TGSFYLGDNP 240
  241 NSHGFKYVSL LTFPESQRMP NLDPLAYTVP MIGIRFGLKK LNISGSVFRP DAGGSGQTMV 300
  301 DSGSEFTHLV DAAYDKVRAE IMTRVGRRLK KGYVYGGTAD MCFDGNVAMI PRLIGDLVFV 360
  361 FTRGVEILVP KERVLVNVGG GIHCVGIGRS SMLGAASNII GNVHQQNLWV EFDVTNRRVG 420
  421 FAKADCSRVV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.51
Transmembrane Helix	8	25	0.51
Non-Cytoplasmic	26	430	0.98