YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2980781, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKRRTVKES TKIRNGKGMD SGEKKRSEKR LMKFEELPRY LKDNEFIHNH YRCEWSIKET  60
   61 FLSAFSWHNE TLNIWTHLCG FAIFTWMMVV SSMETTELGL AGFVSLLSGK IKQISIFLGD 120
  121 LWVLMTEQQF AGHGRQWQCQ KMFTSPAIKL CITSMSHLFA CHSRRFNLFF WRLDYAGISL 180
  181 MIVCSFFAPI YYAFSCHTYW RLFYLSSISI LGLLAIFTLL SPSLSAPRFR SFRAALFLTM 240
  241 GFSGVIPATH VLYLHKDHPN VLIALVYELA MAVLYATGAA FYVTRIPERW KPGAFDIAGH 300
  301 SHQIFHVFVV LGALAHSVAS LLIMDFRRAS PSSSMNPKLR TAIADRATIV LGTLIRKMGR 360
  361 SSFDFSEKSL LFDIIVTPLA KLRSLLSLGQ NETKLLCCKL KTEGA

Type	Start	End	Confidence
Cytoplasmic	1	71	0.74
Transmembrane Helix	72	93	0.79
Non-Cytoplasmic	94	141	0.47
Transmembrane Helix	142	161	0.49
Cytoplasmic	162	172	0.76
Transmembrane Helix	173	193	0.93
Non-Cytoplasmic	194	201	0.74
Transmembrane Helix	202	221	0.95
Cytoplasmic	222	233	0.71
Transmembrane Helix	234	254	0.93
Non-Cytoplasmic	255	262	0.80
Transmembrane Helix	263	284	0.94
Cytoplasmic	285	303	0.88
Transmembrane Helix	304	324	0.96
Non-Cytoplasmic	325	405	0.87