YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6735322, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHPNLSLFH ETFQNILESI QIHSLVTVRS SSFSDTFNGN FLVLHCKISG YKKKTQNLLL  60
   61 NTPLLDLLPL SLLSSEMIMS LPQCSHLRLS ILAATAAMLM VITTAQIGGQ VIQVELWCVA 120
  121 KNNAEDSSLQ TAIEWACGQG GADCGPIQQG GPCNDPTDVQ KMASFVFNNY YLKNGEEDEA 180
  181 CNFNNNAALT SLNPSQGTCK YPSSKGANNG RLADDTSMGA GQADMSRGGR PISSSWMVTF 240
  241 IGFGSLLTMT WIIHHL

Type	Start	End	Confidence
Cytoplasmic	1	61	0.82
Transmembrane Helix	62	79	0.40
Non-Cytoplasmic	80	86	0.46
Transmembrane Helix	87	107	0.70
Cytoplasmic	108	231	0.71
Transmembrane Helix	232	254	0.88
Non-Cytoplasmic	255	256	0.61