YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7269831, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDFDCLSVK LFLRSLVIDC RFYNSLPPIT KAYGTLCFFT TVATQLGLVA PVHIALIPEL  60
   61 VLKQFQIWRL ITNLFFLGGF SINFGIRLLM IARYGVQLEK GPFERRTADF LWMMIFGSFT 120
  121 LLVLSVIPFF WTPFLGVSLV FMLLYLWSRE FPNANISLYG LVTLKAFYLP WAMLALDVIF 180
  181 GSPIMPDLLG IIAGHLYYFL TVLHPLATGK NYLKTPKWVN KIVARWRIGA PVASVRQAGG 240
  241 VGAAGPGAGG GVGGGGAYSS ARAPPESSNT AFRGRSYRLT D

Type	Start	End	Confidence
Cytoplasmic	1	34	0.87
Transmembrane Helix	35	57	0.88
Non-Cytoplasmic	58	69	0.76
Transmembrane Helix	70	91	0.89
Cytoplasmic	92	109	0.80
Transmembrane Helix	110	127	0.89
Non-Cytoplasmic	128	128	0.43
Transmembrane Helix	129	148	0.69
Cytoplasmic	149	155	0.57
Transmembrane Helix	156	181	0.68
Non-Cytoplasmic	182	187	0.47
Transmembrane Helix	188	208	0.73
Cytoplasmic	209	234	0.64
Transmembrane Helix	235	258	0.57
Non-Cytoplasmic	259	281	0.53