YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AZG1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	131	0.96
Transmembrane Helix	132	157	0.84
Non-Cytoplasmic	158	182	0.86
Transmembrane Helix	183	203	0.93
Cytoplasmic	204	213	0.86
Transmembrane Helix	214	232	0.90
Non-Cytoplasmic	233	239	0.66
Transmembrane Helix	240	258	0.56
Cytoplasmic	259	265	0.39
Transmembrane Helix	266	288	0.72
Non-Cytoplasmic	289	294	0.51
Transmembrane Helix	295	312	0.92
Cytoplasmic	313	378	0.55
Transmembrane Helix	379	399	0.49
Non-Cytoplasmic	400	420	0.78
Transmembrane Helix	421	443	0.83
Cytoplasmic	444	454	0.80
Transmembrane Helix	455	475	0.85
Non-Cytoplasmic	476	478	0.56
Transmembrane Helix	479	500	0.71
Cytoplasmic	501	512	0.68
Transmembrane Helix	513	540	0.77
Non-Cytoplasmic	541	579	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQQQQQQLP STTTRPKPKL LNRLNTYVGS SRVGKRFKLA ERNSTFTTEL RAGTATFLTM  60
   61 AYILAVNASI LSDSGGTCSV SDCIPLCSNP AIEPSQCTGP GLRLIQPDVS CKFNPVNPGY 120
  121 AACVEEIRKD LIVATVAASL IGCVIMGLMA NLPLALAPGM GTNAYFAYTV VGFHGSGSIS 180
  181 YRTALAAVFI EGLIFLFISA IGFRAKLAKL VPKPVRISSS AGIGLFLAFI GLQNNQGIGL 240
  241 VGYSPSTLVT LAACPASSRI SLAPVITSAN GTVSLLAGGS VSGDIMCIHG RMESPTFWLG 300
  301 IVGFVIIAYC LVKNVKGAMI YGIVFVTAVS WFRNTEVTAF PNTSAGDAAH DYFKKIVDVH 360
  361 VIKHTAGALS FSGINKGHFW EALVTFLYVD ILDTTGTLYS MARFAGFVDE KGDFAGQYFA 420
  421 FMSDASAIVI GSLLGTSPVT VFIESSTGIR EGGRTGLTAI TVAVYFLLAM FFTPLLASIP 480
  481 AWAVGPPLIL VGVMMMKSVT EIDWEDMREA IPAFVTMILM PLTYSVAYGL IGGIGSYVVL 540
  541 HLWDWGEEGL VKLGFLKRKV KEEDNNNGVV KASEIDTTV