YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRT27_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.92
Transmembrane Helix	42	63	0.91
Non-Cytoplasmic	64	71	0.75
Transmembrane Helix	72	94	0.86
Cytoplasmic	95	105	0.72
Transmembrane Helix	106	125	0.81
Non-Cytoplasmic	126	130	0.43
Transmembrane Helix	131	152	0.63
Cytoplasmic	153	159	0.41
Transmembrane Helix	160	187	0.74
Non-Cytoplasmic	188	197	0.44
Transmembrane Helix	198	222	0.85
Cytoplasmic	223	264	0.51
Transmembrane Helix	265	283	0.48
Non-Cytoplasmic	284	299	0.49
Transmembrane Helix	300	320	0.73
Cytoplasmic	321	340	0.52
Transmembrane Helix	341	361	0.93
Non-Cytoplasmic	362	367	0.48
Transmembrane Helix	368	391	0.87
Cytoplasmic	392	396	0.47
Transmembrane Helix	397	420	0.89
Non-Cytoplasmic	421	429	0.48
Transmembrane Helix	430	453	0.85
Cytoplasmic	454	493	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSQRNTKP PSFSDSTIPV DSDGRATVFR PFSLSSPHSR AFHLAWLSLF SCFFSTFSIP  60
   61 PLVPVISSDL NLSASTVSAA GIASFAGSIF SRLAMGPLCD LIGPRTSSAI LSFLTAPVIL 120
  121 SASLVSSPTS FILVRFFVGF SLANFVANQY WMSSMFSGNV IGLANGVSAG WANVGAGISQ 180
  181 LLMPLIYSTI AEFLPRAVAW RVSFVFPAIF QVTTAVLVLL YGQDTPHGNR KNSNQNKLTI 240
  241 PEEEEVLVVE EDERSSFVEI LIGGLGNYRA WILALLYGYS YGVELTTDNV IAGYFYERFG 300
  301 VNLEAAGTIA ASFGISNIAS RPAGGMISDA LGKRFGMRGR LWGLWIVQSV AGLLCVLLGR 360
  361 VNSLWGSILV MWVFSVFVQA ASGLVFGVVP FVSTRSLGVV AGITGSGGTV GAVVTQFLLF 420
  421 SGDDVRKQRS ISLMGLMTFV FALSVTSIYF PQWGGMCCGP SSSSEEEDIS RGLLVEDEDE 480
  481 EGKVVSGSLR PVC