YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHF1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIEEASRES GHVVCGSWIR RPKKVNWVLI AKASKRRGSS VSSPALLNIF SFDPITASLS  60
   61 SSPLATHTLK DSDGDPVAVS VHPGGDYFVC STSKGGCKLF ELVGGATGIT ILAKELLPLQ 120
  121 NAGLQKCMAF SFDGSKLAVG GVDGCLRIME WPNLSVILDE PKAHKSIRDM DFSLDSEFLA 180
  181 TTSTDGSARI WKAEDGFPLS TLERSGDENI ELCRFSKDGT KPFLFCAAQR GDTPMVNVYD 240
  241 ISTWKKLGFK KLSRKTASTM AVSLDGKYIA LGGKDGDVSV AEVKTMEIYH YSKRLHLGQS 300
  301 IASLEFCPSE RVMLTTSSEW GEMVTKLTVP KEWKEWQIYA LLFCLFMASV IAAYVFFENS 360
  361 DSFWKLPMGK DQKRPKISLF GGSSSTPSED HSRWNLDL

Type	Start	End	Confidence
Cytoplasmic	1	335	0.63
Transmembrane Helix	336	357	0.90
Non-Cytoplasmic	358	398	0.66