YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERS2_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.60
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTLLVQWL VFFFFFLIGS VVTAAEDDGS LSLCNCDDED SLFSYETILN SQKVGDFLIA  60
   61 IAYFSIPIEL VYFVSRTNVP SPYNWVVCEF IAFIVLCGMT HLLAGFTYGP HWPWVMTAVT 120
  121 VFKMLTGIVS FLTALSLVTL LPLLLKAKVR EFMLSKKTRE LDREVGIIMK QTETSLHVRM 180
  181 LTTKIRTSLD RHTILYTTLV ELSKTLGLKN CAVWIPNEIK TEMNLTHELR PRIDDENENE 240
  241 HFGGYAGFSI PISESDVVRI KRSEEVNMLS PGSVLASVTS RGKSGPTVGI RVPMLRVCNF 300
  301 KGGTPEAIHM CYAILVCVLP LRQPQAWTYQ ELEIVKVVAD QVAVAISHAV ILEESQLMRE 360
  361 KLAEQNRALQ VARENALRAN QAKAAFEQMM SDAMRCPVRS ILGLLPLILQ DGKLPENQTV 420
  421 IVDAMRRTSE LLVQLVNNAG DINNGTIRAA ETHYFSLHSV VKESACVARC LCMANGFGFS 480
  481 AEVYRALPDY VVGDDRKVFQ AILHMLGVLM NRKIKGNVTF WVFPESGNSD VSERKDIQEA 540
  541 VWRHCYSKEY MEVRFGFEVT AEGEESSSSS SGSNLEEEEE NPSLNACQNI VKYMQGNIRV 600
  601 VEDGLGLVKS VSVVFRFQLR RSMMSRGGGY SGETFRTSTP PSTSH

Type	Start	End	Confidence
Signal Peptide	1	24	0.60
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	53	0.97
Transmembrane Helix	54	74	0.85
Cytoplasmic	75	84	0.75
Transmembrane Helix	85	105	0.94
Non-Cytoplasmic	106	123	0.78
Transmembrane Helix	124	145	0.92
Cytoplasmic	146	645	0.71