YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11357531, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMVEKNSSA IGYVARNLLL SLFVVTTILF ALSCYFVLRS TAHNRFLSST FPSKSFVDVR  60
   61 PEKANCRCVK DEKSSVIAGP LKVYMYNMDP EFHFGLLDWK KKEGSDSSVW PDIQKYIPPY 120
  121 PGGLNLQHSI EYWLTLDLLA SEYENAPRSV AAKRVYNSSE ADVIFVPFFS SLSYNRFSKV 180
  181 NPHQKTSRNK DLQGKLVTFL TAQEEWKRSG GRDHVVLAHH PNSMLDARNK LFPAMFILSD 240
  241 FGRYPPTVAN VEKDVIAPYK HVIKAYENDT SGFDSRPILL YFQGAIYRKD GGFVRQELFY 300
  301 LLQDEKDVHF SFGSVRNGGI NKASQGMHNS KFCLNIAGDT PSSNRLFDAI ASHCVPVIIS 360
  361 DDIELPFEDV IDYSEFSVFV RTSDALKENF LVNLIRGITK EEWTRMWNRL KEVEKYYEFH 420
  421 FPSKVDDAVQ MIWQAIARKV PGVKMRIHKS RRYSGSVSET GKESRWSSLI PRSFW

Type	Start	End	Confidence
Cytoplasmic	1	17	0.83
Transmembrane Helix	18	38	0.89
Non-Cytoplasmic	39	475	0.97