YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7460037, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.86
Transmembrane Helix	39	57	0.84
Non-Cytoplasmic	58	176	0.50
Transmembrane Helix	177	194	0.38
Cytoplasmic	195	212	0.79
Transmembrane Helix	213	231	0.81
Non-Cytoplasmic	232	245	0.78
Transmembrane Helix	246	265	0.89
Cytoplasmic	266	275	0.82
Transmembrane Helix	276	297	0.93
Non-Cytoplasmic	298	305	0.89
Transmembrane Helix	306	327	0.94
Cytoplasmic	328	347	0.92
Transmembrane Helix	348	367	0.91
Non-Cytoplasmic	368	397	0.91
Transmembrane Helix	398	418	0.80
Cytoplasmic	419	424	0.79
Transmembrane Helix	425	446	0.91
Non-Cytoplasmic	447	457	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICVPGPIIE ALSSTTLSGA GEASVHRHRD PNFSSFRRYF VTLVSFFIFP LLKLFPILSP  60
   61 LVIPLVIPAH NLLTNLPHLA SLPGRSSTQI KEGRLKQHAL SFSHSSAAAL WTDSCSELSH 120
  121 VEKDATPWIF ATYLSHGHSL LPTIFHSSEM TPALQIISPF LDSRRSTSAF WHLDMKLGFS 180
  181 PVDLVSFAGP FLPFRPKPIC CFRTCKAFIL RSDFFNSMLG PLIFLCRSPL INGHGHHLIE 240
  241 ISPWRFWFFI YHLRILVLAI SRNVWPHSKV LKTFSLIFLN CTCLCVKCGF ELWVFIAQWS 300
  301 PSSSSIAFKL ITMSIIMFHC LIVYAAIDRR FVCLLCWILK LTLTDYRTIV LRILAILFPW 360
  361 VLQLAPVRSI ASMSLSTSLR PLTVTNLLSF DYFEDDPSIY CDLTCCTVLL CLCLKALMEF 420
  421 KSMHFIFLFM VLGNTVCCNA LIFEFLNSIS CNCSMFH