YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20197120, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	141	0.93
Transmembrane Helix	142	166	0.76
Non-Cytoplasmic	167	174	0.81
Transmembrane Helix	175	196	0.92
Cytoplasmic	197	223	0.86
Transmembrane Helix	224	244	0.76
Non-Cytoplasmic	245	266	0.82
Transmembrane Helix	267	285	0.86
Cytoplasmic	286	292	0.79
Transmembrane Helix	293	315	0.88
Non-Cytoplasmic	316	330	0.76
Transmembrane Helix	331	353	0.85
Cytoplasmic	354	364	0.91
Transmembrane Helix	365	388	0.91
Non-Cytoplasmic	389	408	0.89
Transmembrane Helix	409	425	0.94
Cytoplasmic	426	444	0.87
Transmembrane Helix	445	466	0.92
Non-Cytoplasmic	467	473	0.67
Transmembrane Helix	474	494	0.94
Cytoplasmic	495	505	0.78
Transmembrane Helix	506	528	0.88
Non-Cytoplasmic	529	536	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDKNNDKEK KTDVTFEDDE DNEDLEDNSS KYENDSETDQ SDLGDLPGDA VDRDDDIDEP  60
   61 FISQVQWPQS FRETTDSYTI AASPIFGSLR SNPPSFYRAS RSNLDVESKA PLLPERHDDS 120
  121 DKASATQSAW SHKGSFAEEL PIGGYGCSVI QTIFNAINVM AGVGLLSTPY TVKEAGWASM 180
  181 VILLLFAVIC CYTATLMKDC FENKTGIITY PDIGEAAFGK YGRILICMLL YTELYSYCVE 240
  241 FIILEGDNLT GLFPGTSLDL LGFRLDSKHL FGILTALIVL PTVWLKDLRI ISYLSAGGVI 300
  301 ATALIAVSVF FLGTTGGIGF HHTGQAVKWN GIPFAIGIYG FCYSGHSVFP NIYQSMADKT 360
  361 KFNKAVITCF IICVLLYGGV AIMGYLMFGE ATLSQITLNM PQDQFFSKVA QWTTVVSPFT 420
  421 KYALLMNPLA RSIEELLPER MSENIWCFLL LRTALVASSV CSAFLIPFFG LMMALIGSLL 480
  481 SILVAIIMPA LCFIKIMGNK ATRTQMILSS IIVAIGVVSG TLGTYSSVAK IIRNYQ