YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAD4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSLPTKYP LRPITNIPKS HRPSLLRVRV TCSVTTTKPQ PNREKLLVEQ RTVNLPLSND  60
   61 QSLQSTKPRP NREKLVVEQR LASPPLSNDP TLKSTWTHRL WVAAGCTTLF VSLAKSVIGG 120
  121 FDSHLCLEPA LAGYAGYILA DLGSGVYHWA IDNYGDESTP VVGTQIEAFQ GHHKWPWTIT 180
  181 RRQFANNLHA LAQVITFTVL PLDLAFNDPV FHGFVCTFAF CILFSQQFHA WAHGTKSKLP 240
  241 PLVVALQDMG LLVSRRQHAE HHRAPYNNNY CIVSGAWNNV LDESKVFEAL EMVFYFQLGV 300
  301 RPRSWSEPNS DWIEETEISN NQA

Type	Start	End	Confidence
Cytoplasmic	1	99	0.85
Transmembrane Helix	100	119	0.56
Non-Cytoplasmic	120	129	0.51
Transmembrane Helix	130	150	0.45
Cytoplasmic	151	183	0.72
Transmembrane Helix	184	202	0.69
Non-Cytoplasmic	203	209	0.73
Transmembrane Helix	210	230	0.86
Cytoplasmic	231	323	0.89