YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12322575, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSLRSTPF ISLRTRKSFN LSPRILALRL SCCSGGSSQN QNFSTDSENK RSFAVATGEL  60
   61 FIGIASRLLK SSNQKTPPID DGDRIASVIE DEIEPAMIWE QRVKDVEAEK ERRVITSPGF 120
  121 SFSAAGLLFP YHLGVAQLLI EKGYIKETTP LAGSSAGAIV CAVITSGATM REALEATKEL 180
  181 AYDCRRNGTA FRLGAVLRES MERLLPDDIH IRSNGRIRVA ITQVFWRPRG LLVDQFDSKS 240
  241 DLIDAVFTSS FIPGPATMFR NRLCVDGGLT LFMPPTAAAK TVRVCAFSAS NFKLKGIEIC 300
  301 PDCNPLNRAT SRQLLNWALE PAEDEVLERL FELGYADAAT WAEMNPVEGL VYDDTPTAQE 360
  361 IPTS

Type	Start	End	Confidence
Signal Peptide	1	38	0.93
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	364	0.95