YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7340673, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.54
Transmembrane Helix	8	28	0.51
Non-Cytoplasmic	29	29	0.41
Transmembrane Helix	30	55	0.74
Cytoplasmic	56	62	0.81
Transmembrane Helix	63	84	0.90
Non-Cytoplasmic	85	92	0.71
Transmembrane Helix	93	118	0.86
Cytoplasmic	119	126	0.75
Transmembrane Helix	127	148	0.85
Non-Cytoplasmic	149	165	0.73
Transmembrane Helix	166	186	0.75
Cytoplasmic	187	268	0.93
Transmembrane Helix	269	289	0.90
Non-Cytoplasmic	290	307	0.71
Transmembrane Helix	308	327	0.90
Cytoplasmic	328	342	0.73
Transmembrane Helix	343	362	0.90
Non-Cytoplasmic	363	378	0.78
Transmembrane Helix	379	397	0.89
Cytoplasmic	398	407	0.68
Transmembrane Helix	408	429	0.92
Non-Cytoplasmic	430	431	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG  60
   61 RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV VLGTISGSII GFIVASIVRP 120
  121 PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII 180
  181 LYTYVYQMFA PPPEGFDAEE ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST 240
  241 EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL 300
  301 FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT 360
  361 VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC GRESAAVLFW VHIFAIFSMA 420
  421 GWMVLYINIL F