YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12323420, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.23
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRTMSAWG SAILIFIILM IVTPTIPQSQ AYHNFADQRS FLGIPNFLNV ISNFPFLIIG  60
   61 LIGLILCFYP EDYFSFSLRG EKIGWTCFYI GVAAVAFGSS YYHLHPNDAT LLWDRLPMTI 120
  121 AFTSIMAIFV IERIDEHKGT YSIAPLLLAG LVSILYWRFF DDLRPYALVQ FVPCIVIPLM 180
  181 AILLPPMYTH STYWLWAAGF YLLAKVEEAA DKPIYSWTHH IISGHSLKHL CAAMVPVFLT 240
  241 LMLAKRTVQT ERISLYKTWK KGSEEERFEH SYSNVAVEET R

Type	Start	End	Confidence
Cytoplasmic	1	7	0.87
Transmembrane Helix	8	27	0.93
Non-Cytoplasmic	28	49	0.84
Transmembrane Helix	50	69	0.94
Cytoplasmic	70	82	0.87
Transmembrane Helix	83	104	0.91
Non-Cytoplasmic	105	110	0.88
Transmembrane Helix	111	131	0.68
Cytoplasmic	132	138	0.63
Transmembrane Helix	139	160	0.86
Non-Cytoplasmic	161	165	0.62
Transmembrane Helix	166	188	0.85
Cytoplasmic	189	191	0.46
Transmembrane Helix	192	206	0.23
Non-Cytoplasmic	207	224	0.49
Transmembrane Helix	225	244	0.70
Cytoplasmic	245	281	0.77