YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11358184, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDLQPSDRR HGAPSSSGGV SGGDELIRTY KGWKGNNVFF LGGRLVFGPD ARSILITVFL  60
   61 ITAPVIVFCI FVGRKFIDDF PHHRGVSVLA VADLVFLLLT SARDPGIIPR NLYPPEPESN 120
  121 EGNGEPRLAH TPQSRLPRTK DMIVNGITVK IKYCDTCMLY RPPRASHCSI CNNCVEKFDH 180
  181 HCPWLGQCIG LRNYRFYFMF VLCSTLLCIY VHVFCWIYVK RIMDSENINI WKSFLKTPAS 240
  241 IALIIYTFIC VWFVGGLTCF HLYLMSTNQS TYENFRYRYD RHENPFNKGI VGNFMEVFCT 300
  301 NVAVSQNSFR EKVSKEPAIP PRTVNGGMSS PSLQKVSNDI EMGRKPVWHE TVEEELGDIE 360
  361 KDMEAGVASR DLSRMLPPEE SEGRGIMHSR ESSRGRGIMH SRESSRGRRG GSWELSSRVN 420
  421 EDLRTRDESV SRVGEDSSES SDNDASRDLH VEIYDAVTSR GRTGTGIGRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.41
Transmembrane Helix	53	73	0.94
Cytoplasmic	74	81	0.40
Transmembrane Helix	82	102	0.76
Non-Cytoplasmic	103	195	0.52
Transmembrane Helix	196	219	0.89
Cytoplasmic	220	238	0.51
Transmembrane Helix	239	265	0.86
Non-Cytoplasmic	266	470	0.58