YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7486498, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSEGASSES SSSGDQLEKW TEEQDELKKK LIAYDDFTWK LSSSTELSQG SEILKYVGGV  60
   61 DMSFCKEDSS VACACLVVLE LPSLRVVHHD FSLLRLHVPY VPGFLAFREA PVLLQILQKM 120
  121 RDEKHPFYPQ VSVLSISCFI SCFALAKVLM VDGNGILHPR GFGLACHLGV LAHLPTIGVG 180
  181 KNLHHVDGLN QSEVKQSLQL QINEHEQTIT LVGNSGITWG VGFRPTLSSL KPIYVSVGHR 240
  241 ISLDSAVEVV KITCKYRVPE PIRQADIRSR AYLQKHQTES FKELAVRPPD QVTSDVFSAI 300
  301 SNHCHIFSYW LTCLFASFFV YQTEP

Type	Start	End	Confidence
Cytoplasmic	1	126	0.79
Transmembrane Helix	127	149	0.77
Non-Cytoplasmic	150	155	0.79
Transmembrane Helix	156	177	0.63
Cytoplasmic	178	305	0.73
Transmembrane Helix	306	321	0.54
Non-Cytoplasmic	322	325	0.51